cellsystem.h File Reference

Include the definitions necessary for the cell system division algorithm and model. More...

#include <config.h>
#include <algorithms/complex.h>
#include <geometry/intersection.h>
#include <geometry/area.h>
#include <util/matrix.h>
#include <model.h>
#include <util/parms.h>
#include <sstream>
#include <algorithms/tissue.h>
#include <storage/storage.h>
#include <storage/complex.h>
#include <iostream>

Go to the source code of this file.

Classes

class  cell_system::CellSystem< Complex, MyModel >
 Full cell-system model. More...
class  cell_system::CellSystemCell
 Content of a vertex for the 2D cell system. More...
class  cell_system::CellSystemDivisionParams
 Parameters for cell-system division. More...
class  cell_system::CellSystemJunction
 Content of a vertex for the 2D cell system. More...
class  cell_system::DivisionParams
 Structure storing the right hand side of a division rule. More...

Namespaces

namespace  cell_system
 

Namespace defining the cell system division algorithm and model.


Defines

#define EPSILON   0.00001

Typedefs

typedef int cell_system::label_t
 Type of the label of a cell (for full cell-system only).

Functions

template<class Complex >
DivisionData< typename
Complex::junction_content > 
cell_system::findDivisionPoints (const typename Complex::cell &c, Complex &T, const CellSystemDivisionParams &params)
 Division algorithm for cell-system.
template<class Complex >
DivisionData< typename
Complex::junction_content > 
cell_system::findDivisionPoints (const typename Complex::cell &c, Point3d &center, Complex &T, const Point3d &direction)
 Find the division points for a wall going through a given point.
std::string cell_system::removeWhitespace (std::string s)
 Convenience function that removes white spaces before and after the string.
template<class Complex >
double cell_system::volumeLeftCell (const typename Complex::cell &c, Complex &T, const Point3d &center, const DivisionData< typename Complex::junction_content > &result)
 Compute the volume of the left cell of a division.

Detailed Description

Include the definitions necessary for the cell system division algorithm and model.

Definition in file cellsystem.h.

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